RAMPART is a de novo assembly pipeline that makes use of third party-tools and High Performance Computing resources. It can be used as a single interface to several popular assemblers, and can perform automated comparison and analysis of any generated assemblies.
RAMPART was created by The Genome Analysis Centre (TGAC) in Norwich, UK by:
- Daniel Mapleson
- Nizar Drou
- David Swarbreck
Useful links:
- Project Website: http://www.tgac.ac.uk/rampart/
- Online Documentation (this manual): http://rampart.readthedocs.org/en/latest/index.html
- Source code and distributable tarball: https://github.com/TGAC/RAMPART
Table of ContentsΒΆ
- Introduction
- Dependencies
- Installation
- Environment configuration
- Running RAMPART
- Multi-sample projects
- Citing RAMPART
- License
- Contact
- Acknowledgements